Package: scFlex 0.1.0

scFlex: Flexible Conversion Between Single-Cell Data Objects

Provides conversion among 'Seurat', 'SingleCellExperiment', 'AnnData', and 'Loom' single-cell data representations while preserving expression matrices, cell and feature metadata, and dimensionality reductions when supported by the target format. The package performs alignment and validity checks during conversion and reports unsupported or unavailable components rather than silently reconstructing them.

Authors:Mohamed N. Hassan [aut, cre]

scFlex_0.1.0.tar.gz
scFlex_0.1.0.zip(r-4.7-any)scFlex_0.1.0.zip(r-4.6-any)scFlex_0.1.0.zip(r-4.5-any)
scFlex_0.1.0.tgz(r-4.6-any)scFlex_0.1.0.tgz(r-4.5-any)
scFlex_0.1.0.tar.gz(r-4.7-any)scFlex_0.1.0.tar.gz(r-4.6-any)
scFlex_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
scFlex/json (API)

# Install 'scFlex' in R:
install.packages('scFlex', repos = c('https://mohamednhassan.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mohamednhassan/scflex/issues

Pkgdown/docs site:https://mohamednhassan.github.io

On CRAN:

Conda:

3.88 score 3 stars 16 downloads 16 exports 28 dependencies

Last updated from:b9cb7315b1. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE226
source / vignettesOK285
linux-releaseNOTE165
macos-releaseNOTE132
macos-oldrelNOTE126
windows-develNOTE191
windows-releaseNOTE112
windows-oldrelNOTE130
wasm-releaseOK156

Exports:convert_anndata_to_loomconvert_anndata_to_sceconvert_anndata_to_seuratconvert_loom_to_anndataconvert_loom_to_sceconvert_loom_to_seuratconvert_scconvert_sce_to_anndataconvert_sce_to_loomconvert_sce_to_seuratconvert_seu_classic_to_v5convert_seu_v5_to_classicconvert_seurat_to_anndataconvert_seurat_to_loomconvert_seurat_to_sceinspect_sc

Dependencies:clicodetoolsdigestdotCall64futurefuture.applygenericsglobalsherejsonlitelatticelifecyclelistenvMatrixparallellypngprogressrrappdirsRcppRcppEigenRcppTOMLreticulaterlangrprojrootSeuratObjectspspamwithr