{ "_id": "6abd675f99f7aa8c6aa4fe27", "Package": "scFlex", "Type": "Package", "Title": "Flexible Conversion Between Single-Cell Data Objects", "Version": "0.1.0", "Authors@R": "c(\nperson(\"Mohamed N.\", \"Hassan\", role = c(\"aut\", \"cre\"),\nemail = \"m.nhassan@hotmail.com\")\n)", "Description": "Provides conversion among 'Seurat',\n'SingleCellExperiment', 'AnnData', and 'Loom' single-cell data\nrepresentations while preserving expression matrices, cell and\nfeature metadata, and dimensionality reductions when supported\nby the target format. The package performs alignment and\nvalidity checks during conversion and reports unsupported or\nunavailable components rather than silently reconstructing\nthem.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Config/testthat/edition": "3", "URL": "https://github.com/mohamednhassan/scFlex,\nhttps://mohamednhassan.github.io/scFlex/", "BugReports": "https://github.com/mohamednhassan/scFlex/issues", "Config/roxygen2/version": "8.1.0", "Config/pak/sysreqs": "libpng-dev python3", "Repository": "https://mohamednhassan.r-universe.dev", "Date/Publication": "2026-09-30 16:35:14 UTC", "RemoteUrl": "https://github.com/mohamednhassan/scflex", "RemoteRef": "HEAD", "RemoteSha": "b9cb7315b1816140795d7caf68d5b0714a69ddae", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-30 19:39:30 UTC", "User": "root" }, "Author": "Mohamed N. Hassan [aut, cre]", "Maintainer": "Mohamed N. Hassan ", "_user": "mohamednhassan", "_type": "src", "_file": "scFlex_0.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/bf401b191f0d1fc93e2bb60081b471a12bb62eb52f150df83bbdc615992416c6", "_filesize": 1099922, "_sha256": "bf401b191f0d1fc93e2bb60081b471a12bb62eb52f150df83bbdc615992416c6", "_expires": "2027-01-08T19:47:29.000Z", "_created": "2026-09-30T19:39:30.000Z", "_published": "2026-09-30T19:47:43.321Z", "_jobs": [ { "job": 110064332591, "time": 226, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11121462169" }, { "job": 110064332626, "time": 165, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11122475686" }, { "job": 110064332497, "time": 126, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11122351453" }, { "job": 110064332477, "time": 132, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11122670796" }, { "job": 110062495809, "time": 285, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11121801379" }, { "job": 110064332513, "time": 156, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11122695597" }, { "job": 110064332651, "time": 191, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11121491996" }, { "job": 110064332774, "time": 130, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11121846629" }, { "job": 110064332654, "time": 112, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11121826629" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/mohamednhassan/actions/runs/36766640946", "_status": "success", "_upstream": "https://github.com/mohamednhassan/scflex", "_commit": { "id": "b9cb7315b1816140795d7caf68d5b0714a69ddae", "author": "mohamednhassan ", "committer": "mohamednhassan ", "message": "Add citation metadata and usage examples\n", "time": 1790786114 }, "_maintainer": { "name": "Mohamed N. Hassan", "email": "m.nhassan@hotmail.com", "login": "mohamednhassan", "description": "", "uuid": 62857225 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "Matrix", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "reticulate", "version": ">= 1.41.0", "role": "Imports" }, { "package": "SeuratObject", "role": "Imports" }, { "package": "hdf5r", "role": "Suggests" }, { "package": "Seurat", "role": "Suggests" }, { "package": "SingleCellExperiment", "role": "Suggests" }, { "package": "SummarizedExperiment", "role": "Suggests" }, { "package": "S4Vectors", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "mohamednhassan", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-35", "n": 1 }, { "week": "2026-36", "n": 1 }, { "week": "2026-37", "n": 17 }, { "week": "2026-38", "n": 1 }, { "week": "2026-40", "n": 3 } ], "_tags": [ { "name": "v0.1.0", "date": "2026-09-30" } ], "_stars": 3, "_contributors": [ { "user": "mohamednhassan", "count": 28, "uuid": 62857225 } ], "_userbio": { "uuid": 62857225, "type": "user", "name": "Mohamed N. Hassan", "followers": 3 }, "_downloads": { "count": 16, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/scFlex" }, "_devurl": "https://github.com/mohamednhassan/scflex", "_pkgdown": "https://mohamednhassan.github.io/scFlex/", "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/scFlex.html", "LICENSE" ], "_homeurl": "https://github.com/mohamednhassan/scflex", "_realowner": "mohamednhassan", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2026-09-29" } ], "_exports": [ "convert_anndata_to_loom", "convert_anndata_to_sce", "convert_anndata_to_seurat", "convert_loom_to_anndata", "convert_loom_to_sce", "convert_loom_to_seurat", "convert_sc", "convert_sce_to_anndata", "convert_sce_to_loom", "convert_sce_to_seurat", "convert_seu_classic_to_v5", "convert_seu_v5_to_classic", "convert_seurat_to_anndata", "convert_seurat_to_loom", "convert_seurat_to_sce", "inspect_sc" ], "_help": [ { "page": "scFlex-package", "title": "scFlex: Preservation-Aware Single-Cell Interoperability", "topics": [ "scFlex-package", "scFlex" ] }, { "page": "convert_anndata_to_loom", "title": "Convert AnnData to Loom", "topics": [ "convert_anndata_to_loom" ] }, { "page": "convert_anndata_to_sce", "title": "Convert AnnData to SingleCellExperiment", "topics": [ "convert_anndata_to_sce" ] }, { "page": "convert_anndata_to_seurat", "title": "Convert AnnData to Seurat", "topics": [ "convert_anndata_to_seurat" ] }, { "page": "convert_loom_to_anndata", "title": "Convert Loom to AnnData", "topics": [ "convert_loom_to_anndata" ] }, { "page": "convert_loom_to_sce", "title": "Convert Loom to SingleCellExperiment", "topics": [ "convert_loom_to_sce" ] }, { "page": "convert_loom_to_seurat", "title": "Convert Loom to Seurat", "topics": [ "convert_loom_to_seurat" ] }, { "page": "convert_sc", "title": "Convert between supported single-cell formats", "topics": [ "convert_sc" ] }, { "page": "convert_sce_to_anndata", "title": "Convert SingleCellExperiment to AnnData", "topics": [ "convert_sce_to_anndata" ] }, { "page": "convert_sce_to_loom", "title": "Convert SingleCellExperiment to Loom", "topics": [ "convert_sce_to_loom" ] }, { "page": "convert_sce_to_seurat", "title": "Convert SingleCellExperiment to Seurat", "topics": [ "convert_sce_to_seurat" ] }, { "page": "convert_seu_classic_to_v5", "title": "Convert a classic Seurat Assay to Assay5", "topics": [ "convert_seu_classic_to_v5" ] }, { "page": "convert_seu_v5_to_classic", "title": "Convert a Seurat Assay5 assay to a classic Assay", "topics": [ "convert_seu_v5_to_classic" ] }, { "page": "convert_seurat_to_anndata", "title": "Convert Seurat to AnnData", "topics": [ "convert_seurat_to_anndata" ] }, { "page": "convert_seurat_to_loom", "title": "Convert Seurat to Loom", "topics": [ "convert_seurat_to_loom" ] }, { "page": "convert_seurat_to_sce", "title": "Convert Seurat to SingleCellExperiment", "topics": [ "convert_seurat_to_sce" ] }, { "page": "inspect_sc", "title": "Inspect a single-cell object", "topics": [ "inspect_sc" ] } ], "_readme": "https://github.com/mohamednhassan/scflex/raw/HEAD/README.md", "_rundeps": [ "cli", "codetools", "digest", "dotCall64", "future", "future.apply", "generics", "globals", "here", "jsonlite", "lattice", "lifecycle", "listenv", "Matrix", "parallelly", "png", "progressr", "rappdirs", "Rcpp", "RcppEigen", "RcppTOML", "reticulate", "rlang", "rprojroot", "SeuratObject", "sp", "spam", "withr" ], "_score": 3.8750612633917, "_indexed": true, "_nocasepkg": "scflex", "_universes": [ "mohamednhassan" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.0", "date": "2026-09-30T19:43:03.000Z", "distro": "resolute", "commit": "b9cb7315b1816140795d7caf68d5b0714a69ddae", "fileid": "https://r2.ropensci.org/f91f6044d1ad7dda4d3a413f329c408a3fa1719a204a9436763209b54d974cd4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mohamednhassan/actions/runs/36766640946" }, { "r": "4.6.1", "os": "linux", "version": "0.1.0", "date": "2026-09-30T19:42:11.000Z", "distro": "resolute", "commit": "b9cb7315b1816140795d7caf68d5b0714a69ddae", "fileid": "https://r2.ropensci.org/54bc49c1882cc7e27176da99b085aae190870208c70e4a36afd5ebf15adfa189", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mohamednhassan/actions/runs/36766640946" }, { "r": "4.5.3", "os": "mac", "version": "0.1.0", "date": "2026-09-30T19:46:40.000Z", "commit": "b9cb7315b1816140795d7caf68d5b0714a69ddae", "fileid": "https://r2.ropensci.org/be6c1e3b1b4f6c68f7c9fd7a663f409c5697d38a7e0915189bdc4cce8e3fa610", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mohamednhassan/actions/runs/36766640946" }, { "r": "4.6.1", "os": "mac", "version": "0.1.0", "date": "2026-09-30T19:42:52.000Z", "commit": "b9cb7315b1816140795d7caf68d5b0714a69ddae", "fileid": "https://r2.ropensci.org/37bb222cc82627e09b1a73472a2d782ed288e01d1a9074fe4d906c593c84ea67", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mohamednhassan/actions/runs/36766640946" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.0", "date": "2026-09-30T19:42:24.000Z", "commit": "b9cb7315b1816140795d7caf68d5b0714a69ddae", "fileid": "https://r2.ropensci.org/c2208b1ea54575b347d697222d6319db4cd43f3307542a8dc9591c6f622d5751", "status": "success", "buildurl": "https://github.com/r-universe/mohamednhassan/actions/runs/36766640946" }, { "r": "4.7.0", "os": "win", "version": "0.1.0", "date": "2026-09-30T19:42:21.000Z", "commit": "b9cb7315b1816140795d7caf68d5b0714a69ddae", "fileid": "https://r2.ropensci.org/59c55fcaa8f7ddd70fccd7e149a62cc01d5a389c498b145e76491a260b1de869", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mohamednhassan/actions/runs/36766640946" }, { "r": "4.5.3", "os": "win", "version": "0.1.0", "date": "2026-09-30T19:41:18.000Z", "commit": "b9cb7315b1816140795d7caf68d5b0714a69ddae", "fileid": "https://r2.ropensci.org/49b539a43cec07362c8f5d84527a94215cab6c257f2b9d31275867cb6c60d2d9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mohamednhassan/actions/runs/36766640946" }, { "r": "4.6.1", "os": "win", "version": "0.1.0", "date": "2026-09-30T19:41:06.000Z", "commit": "b9cb7315b1816140795d7caf68d5b0714a69ddae", "fileid": "https://r2.ropensci.org/f1c61b95f91aa71e72c17424e2600415ad6400818c8d174cae6d52b05ec07f57", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mohamednhassan/actions/runs/36766640946" } ] }